VIB Bioinformatics Core

With Ingenuity Pathways Analysis you can summarize a variety of biological information around your gene of interest. Create visually appealing networks of your pathway or your gene lists and start discovering biology! Which biological processes does your gene list represent? IPA can tell you immediately, based on their curated information source extracted from the literature.

We have several free IPA licenses for use by VIB scientists.

 

Get it!

How to access IPA? (VIB scientists only)

IPA news

• Read the latest release notes (here).
• Read the archived release notes (here).

Online Tutorials

• Recorded IPA webinars and tutorial videos (in particular the 3-part series covering most of IPA)
  • IPA Webinar: Part 1: Introduction to Ingenuity Pathway Analysis
  • IPA Webinar: Part 2: Formatting and Uploading Your Dataset into IPA
  • IPA Webinar: Part 3: Search and Explore in IPA
• IPA workflows (the different IPA modules and their objectives)
• PLEASE view this 18 minute video about p.values, BH correction and z-scores
  
• A large number of additional videos can be found at the New Qiagen dedicated IPA-video channel
• Search for a particular topic or keyword on the search page
• The IPA online manual may also be of help

IPA Data sharing

• How can I share data with other IPA users?
• Sharing data with another IPA user (step 1 of 2)
• Accessing data shared with ME by another IPA user (step 2 of 2)

Recent custom IPA training slides

Sessions June-July 2020

• IPA Introductory slides
• IPA robustness analysis

BITS Material

• Check the BITS IPA training page: slides, exercises, example data sets
• Slide-deck explaining most of IPA features
• IPA quick reference card
• Convert IDs between species with BIOMart
• IPA create large lists from search results
• Analyze non-human data in IPA
• Special considerations about Data upload
• Parkinson's Disease as a model to demonstrate Genvestigator and IPA integration
• IPA core analysis on 10X scRNA-Seq data (added: 12/2018)

NEW 2020

IPA is now more than just IPA thanks to 'Analysis Match', 'BioProfiler', 'Activity Plots', 'Metadata keys', and more ...

• learn how to understand biological using Analysis match (video)
• IPA manual about Analysis Match
• IPA manual about BioProfiler
• IPA Activity Plots
• IPA Metadata Keys

NEW 2020/07 

We have complimentary access to Omicsoft LandExplorer within IPA until end of the current license

• discover the power of LandExplorer with this webcast
• Note: Omicsoft LandExplorer data can be accessed from links in several core analysis tabs

VIB-only pages

(require VIB login)

• Transfer your IPA account before leaving VIB (VIB scientists only)
• IPA Q&A (VIB scientists only)
• IPA gene content (VIB scientists only)
• List of neurological Journals used in IPA (VIB scientists only)