Introduction to the analysis of NGS data

Course date(s)  
Trainer Janick Mathys
Location Leuven
BITS Courses TRAINING AT VIB

Summary

This training is a prerequisite introduction to a series of trainings on the analysis of NGS data for different applications: 'Hands-on introduction to NGS variant analysis', 'RNA-Seq analysis for differential expression', and 'Hands-on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings, you have to follow this introduction. The training will give you all the background that you will need in the later NGS trainings.

Prerequisites

None

Schedule

See the TRAINING AT VIB website for a detailed schedule of this training.

Training material

  • Slides: Introduction
  • Slides: Data file formats and handling, workflows, quality control, assembly and mapping
  • Slides: Introduction to Linux command line
  • Slides on other NGS platforms like Ion Torrent and Roche 454 not handled during the training
  • Linux command line cheat sheet

Links

Scientific topics Workflows, Sequence trace format, Sequence feature annotation format, Sequence assembly
Target audience Life Science Researchers, PhD students, post-docs