Published Date: June 28th, 2015: IPA® is a powerful web-based knowledge base system designed for biologists.
Read the full release notes (here).
New in this release
- Quickly visualize and identify significant genes or regulators across conditions.
- NEW: IPA client installer (the end of issues with login!)
- Improved performance when opening analysis results
Content Updates
- ~70,000 new findings (total of nearly 5.3 million findings), including:
- ~36,000 new Expert findings
- ~800 new ExpertAssist findings
- ~23,000 new protein-protein interactions from IntAct database
- ~8,600 new mutation-to-disease findings from ClinVar
- ~1,300 new gene-to-biological process assertions from Gene Ontology (GO)
- ~1,200 new disease target findings from ClinicalTrials.gov
- ~1,700 new drug to disease findings from ClinicalTrials.gov
- ~300 new mouse knockout-to-phenotype findings in Mouse Genome Database (JAX Labs)
- ~200 new gene to disease findings from OMIM
Revised signaling pathways:
- AMPK Signaling Pathway: Nodes encompassing 30 additional Entrez Gene IDs have been added.
Support for additional microarrays:
Affymetrix
- GeneChip miRNA 3.1 Array
- GeneChip miRNA 4.0 Array
- GeneChip miRNA 4.1 Array
Mapping and gene model improvements:
- Upgraded to Ensembl version 79
- Upgraded to RefSeq version 69
To access IPA at VIB, please check our IPA page
To update IPA core analyses to the new content, read our IPA-FAQ page (VIB users only).
